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ABSTRACT Microorganisms are important catalysts for the oxidation of reduced inorganic sulfur compounds. One environmentally important source of reduced sulfur is metal sulfide minerals that occur in economic mineral deposits and mine waste. Previous research found thatSulfuriferulaspp. were abundant and active in long-term weathering experiments with simulated waste rock and tailings from the Duluth Complex, Northern Minnesota. We, therefore, isolated several strains ofSulfuriferulaspp. from these long-term experiments and characterized their metabolic and genomic properties to provide insight into microbe-mineral interactions and the microbial biogeochemistry in these and other moderately acidic to circumneutral environments. TheSulfuriferulastrains are all obligate chemolithoautotrophs capable of oxidizing inorganic sulfur compounds and ferrous iron. The strains grew over different pH ranges, but all grew between pH 4.5 and 7, matching the weathering conditions of the Duluth Complex rocks. All strains grew on the iron-sulfide mineral pyrrhotite (Fe_{1 −x}S, 0 <x< 0.125) as the sole energy source, as well as hydrogen sulfide and thiosulfate, which are products of sulfide mineral breakdown. Despite their metabolic similarities, each strain encodes a distinct pathway for the oxidation of reduced inorganic sulfur compounds as well as differences in nitrogen metabolism that reveal diverse genomic capabilities among the group. Our results show thatSulfuriferulaspp. are primary producers that likely play a role in sulfide mineral breakdown in moderately acidic to circumneutral mine waste, and the metabolic diversity within the genus may explain their success in sulfide mineral-rich and other sulfidic environments. IMPORTANCEMetal sulfide minerals, such as pyrite and pyrrhotite, are one of the main sources of reduced sulfur in the global sulfur cycle. The chemolithotrophic microorganisms that break down these minerals in natural and engineered settings are catalysts for biogeochemical sulfur cycling and have important applications in biotechnological processes such as biomining and bioremediation.Sulfuriferulais a recently described genus of sulfur-oxidizing bacteria that are abundant primary producers in diverse terrestrial environments, including waste rock and tailings from metal mining operations. In this study, we explored the genomic and metabolic properties of new isolates from this genus, and the implications for their ecophysiology and biotechnological potential in ore and waste from economic mineral deposits. 

Abstract The Duluth Complex (DC) contains sulfide‐rich magmatic intrusions that represent one of the largest known economic deposits of copper, nickel, and platinum group elements. Previous work showed that microbial communities associated with experimentally‐weathered DC waste rock and tailings were dominated by uncultivated taxa and organisms not typically associated with mine waste. However, those experiments were designed for kinetic testing and do not necessarily represent the conditions expected for long‐term environmental weathering. We used 16S rRNA gene methods to characterize the microbial communities present on the surfaces of naturally‐weathered and historically disturbed outcrops of DC material. Rock surfaces were dominated by diverse unculturedKtedonobacteria,Acetobacteria, andActinobacteria, with abundant algae and other phototrophs. These communities were distinct from microbial assemblages from experimentally‐weathered DC rocks, suggesting different energy and nutrient resources in environmental samples. Sulfide mineral incubations performed with and without algae showed that photosynthetic microorganisms could have an inhibitory effect on autotrophic populations, resulting in slightly lower sulfate release and differences in dominant microorganisms. The microbial assemblages from these weathered outcrops show how communities develop during weathering of sulfide‐rich DC rocks and represent baseline data that could evaluate the effectiveness of future reclamation of waste produced by large‐scale mining operations. 

No matter how quiet and pristine a cave setting may appear, all speleothems contain assemblages of magnetic minerals. These iron oxide minerals are derived largely from overlying soils, though minor fractions may come from the residuum of dissolved bedrock, reworked sediment carried by episodic floods, geomicrobiological activity, and even windblown dust. Regardless of their origin, these minerals become aligned with Earth’s ambient magnetic field before they are fixed within a speleothem’s growing carbonate matrix. Here, we describe how the magnetism of stalagmites and flowstone can be used to chronicle high-resolution geomagnetic behavior and environmental change.